Logo
master

Get started

  • Setup
    • Clone Git Repository
    • Directory Structure
    • Setup docker
    • Install Snakemake
  • Configuring DICAST
    • Snakemake parameters
    • ASimulatoR parameters
    • Tool core parameters
    • Alternative splicing tools parameters
  • Run your analysis
    • Run DICAST via Command Line Interface
    • Run one specific tool via Docker
    • Run DICAST with a graphical user interface (depreciated)
    • DICAST Outputs

Tools

  • General Information
  • Mapping tools
    • BBMap
    • ContextMap 2.0
    • CRAC
    • Dart
    • GSNAP
    • HISAT2
    • MapSplice 2
    • Minimap2
    • segemehl
    • STAR
    • Subjunc
  • Splicing tools
    • ASGAL
    • Aspli
    • EventPointer
    • IRFinder
    • MAJIQ
    • SGSeq
    • SplAdder
    • Whippet

Further information

  • Examples
  • FAQ
  • Uninstalling DICAST
  • About
DICAST
  • Search

© Copyright 2021. Revision 8d4175eb.

Built with Sphinx using a theme provided by Read the Docs.