master
Get started
Setup
Clone Git Repository
Directory Structure
Setup docker
Install Snakemake
Configuring DICAST
Snakemake parameters
ASimulatoR parameters
Tool core parameters
Alternative splicing tools parameters
Run your analysis
Run DICAST via Command Line Interface
Run one specific tool via Docker
Run DICAST with a graphical user interface (depreciated)
DICAST Outputs
Tools
General Information
Mapping tools
BBMap
ContextMap 2.0
CRAC
Dart
GSNAP
HISAT2
MapSplice 2
Minimap2
segemehl
STAR
Subjunc
Splicing tools
ASGAL
Aspli
EventPointer
IRFinder
MAJIQ
SGSeq
SplAdder
Whippet
Further information
Examples
FAQ
Uninstalling DICAST
About
DICAST
Index
Edit on GitHub
Index
Read the Docs
v: master
Versions
master
Downloads
pdf
html
epub
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